Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs457568 chr5:94611029 T/G 1.83E-8 177 2.15 17.37 14.37 KM Plot
PAAD rs457819 chr5:94606023 G/A 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs458134 chr5:94606407 G/C 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs458390 chr5:94607452 T/A 2.27E-8 177 2.15 17.5 14.48 KM Plot
PAAD rs458663 chr5:94608700 A/G 1.95E-8 176 2.15 18.48 14.35 KM Plot
PAAD rs458978 chr5:94604060 T/C 4.55E-8 177 2.15 17.23 14.48 KM Plot
PAAD rs459730 chr5:94603384 C/T 9.49E-8 174 2.15 17.37 14.48 KM Plot
PAAD rs459871 chr5:94607522 A/G 1.72E-8 177 2.15 17.5 14.35 KM Plot
PAAD rs460102 chr5:94605476 A/C 2.17E-8 178 14.48 18.48 2.15 KM Plot
PAAD rs460363 chr5:94602586 C/T 5.47E-8 176 2.15 17.5 14.6 KM Plot
PAAD rs460924 chr5:94606440 C/T 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs460963 chr5:94607520 A/G 1.72E-8 177 2.15 17.5 14.35 KM Plot
PAAD rs461059 chr5:94603863 T/C 8.01E-8 176 2.15 17.23 14.6 KM Plot
PAAD rs462526 chr5:94605737 T/C 2.17E-8 178 2.15 18.48 14.48 KM Plot
PAAD rs462828 chr5:94607831 T/A 1.61E-8 176 2.15 17.5 14.33 KM Plot